FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005009152

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005009152
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1098416
Sequences flagged as poor quality0
Sequence length100-151
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CACCCGT5500.001873922210.5631761
CAACACG6150.00487220249.4123374
CGATATA10651.0185808E-58.8646371
CTCCAAT8700.00100085388.3473371
CTCTGAT9000.0013996738.0690931
CTTCCCA9100.0015609257.98042151
CTCTTGT9200.00173844577.8936781
CTTCAAT17051.5975274E-77.6668221
CAAGTAT11402.1591854E-47.64440441
CTCAATG8700.0092846347.51260331
CCTGGAA8700.0092846347.51260331
CACAAGG9800.00323149827.41039131
CTCCGAT9900.00356842417.33553931
CTACAAT10900.00112284447.3288091
CAACATT12154.4951448E-47.17252731
CTCAACA10250.005005647.0850571
CTCCTGA10400.00576403046.98286871
CTTATAT14959.230215E-56.8007071
AGTTTAT14003.19759E-46.71889646
CTATGAA12050.00323741026.62937931
Produced by FastQC (version 0.11.5)