FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005009168

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005009168
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences493658
Sequences flagged as poor quality0
Sequence length100-151
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCTCAAC3100.00597146913.9848911
CTTTGAC4705.2345096E-412.2987711
TCCGATT4400.004510204311.4811842
CTCCTCG5150.001127446311.224121
CCTTGAT6901.0281631E-410.4717781
CTTCTAC4850.009219767510.42859651
CTTTGAT8256.193583E-48.7582151
CTTCCAT9302.153087E-48.5463231
CTTCAAA8900.00131448088.1185691
CTTGATA8100.0051686628.0186042
CAAAAAG11500.0020833356.91137461
TGCTCGC2650.0092824245.991866675-79
Produced by FastQC (version 0.11.5)