FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005009231

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005009231
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2872854
Sequences flagged as poor quality0
Sequence length100-151
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATAGAGT14404.473245E-46.5373421
CTCAAAT21951.6228023E-66.2681511
CTTTGAT42303.6379788E-125.82048131
CCCATCC19951.0462943E-45.80760961
GTTTAAA18752.8219956E-45.7930911
CTATAAC17557.6246564E-45.77658651
CCCATGT18050.00108994115.616571
CCTCAAC20751.8410018E-45.5837021
CCTACAT15600.0077400035.570281
CTCCGCT24701.2015349E-55.57027961
CCCAAAT17200.0037657015.4731241
CTCCAAT21352.766076E-45.4267831
GTGCAAT19300.00253569665.2528031
CAAACGG29005.7842553E-65.2437461
CAAAGAT46853.8926373E-105.10064031
Produced by FastQC (version 0.11.5)