FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005009232

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005009232
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1362847
Sequences flagged as poor quality0
Sequence length100-151
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACACGTC5250.00138607310.9526798
CGATCCT7352.059856E-49.778464
TTAACAG7950.0045404368.1370138
CTACGAT8500.0078727267.6529021
GCCTTAT11900.002985226.68110471
CTTTGGT14906.914638E-46.30608221
CTTCCAA18353.1869775E-56.30211731
CGATAAA19356.901E-55.9764261
CTCCGTT13350.0098775315.9554421
GGGGGGG3200.00158208015.8877025105-109
CCCGAAG16200.00188899355.80003831
AAACGAA19053.832362E-45.6631352
TCCACTT16700.0028982685.59500657
AATGATT19050.0023421655.28559262
TTTTGCT23201.758096E-45.26665267
AATTTCC19450.00306473445.17328265
CAATATA19550.00326740235.1468214
CCGGCTT21300.00160089625.0899581
Produced by FastQC (version 0.11.5)