FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005009299

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005009299
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences539081
Sequences flagged as poor quality0
Sequence length100-151
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CAAGTTA1950.00704888518.4914724
CCAATCT3453.844453E-516.7227213
CACAAGT2750.002600326715.8477481
CAACTAT3808.783141E-515.182474
CTTAAAT3850.001579081613.2064561
TCCAATC5008.926927E-411.5418892
CACAGAT5600.002170381410.3765011
CTTCAAA9552.5324061E-69.8875561
CGTTCTT6800.00106416479.5448624
CACCAAG6500.0074311878.9397551
CATCATT9051.5143902E-48.8286251
CAATCTT7400.00229973258.7709544
AATCTTG6650.0094997678.6756975
ATCAAAG9050.00147256488.0260231
CTCAAAA8300.006073217.876141
CTTTGAT8750.0097389577.47108131
TTCATCC10200.0050982997.0702683
CTTCTTT16002.2203902E-46.3556071
Produced by FastQC (version 0.11.5)