FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005009311

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005009311
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1178898
Sequences flagged as poor quality0
Sequence length100-151
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCCGAAT6254.244285E-511.4269161
CACCAAT8851.4312465E-48.8768411
CTCTCGG6450.0080238318.8580741
CTCAAAT9703.9960774E-58.8352441
CTCCCAT8700.00118114078.2089911
CTAAAAT11653.3622788E-47.35638331
CTTTAAT13050.00122753616.56719261
CTCAAAA13950.00260180286.1435031
GAGCTCA3350.00156984135.8914733125-129
TCAAATT15650.0097976875.45152572
CAAATTT16950.0039398665.45147753
CTTTTCA23600.0063006275.2376666145
Produced by FastQC (version 0.11.5)