FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005009378

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005009378
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1887829
Sequences flagged as poor quality0
Sequence length100-151
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCCCGA7602.7502707E-49.5018071
CCCAAAT10457.6167495E-47.6014451
CCCATTT16357.350536E-77.5084611
CCCAGAT18353.231596E-56.2965651
CTTATTG15350.00688406275.6295093
ATTTCCC21002.3948042E-45.48159656
ATTTCAC19756.212466E-45.46424966
CTTTAAT21653.5054947E-45.33681151
GTTCATT19150.00237895735.27933261
Produced by FastQC (version 0.11.5)