FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005009420

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005009420
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1019141
Sequences flagged as poor quality0
Sequence length100-151
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTGTCA3350.0099782812.9419993
TCATGAG4900.00993714710.3253182
CCCCCCC2005.001304E-58.66943760-64
GTAAGAA10105.0770876E-47.89425131
CATGGTG8400.0069003447.76609851
CTCCGAT9550.00255608337.58990341
CAACAAT14407.121391E-67.5503731
GTCTGAT10500.00644125986.90319821
GTCATTG11850.00277025166.7284341
AATCAAC10850.0091282766.65855466
CTCCGGA13350.00134211816.5153781
CAGGATT14450.00326791666.01939771
AAGATTC15850.0094226835.47075033
Produced by FastQC (version 0.11.5)