FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005009428

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005009428
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1031258
Sequences flagged as poor quality0
Sequence length100-151
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCAAGA6951.0977726E-410.4067491
CTTACGA6150.0048886789.4083781
CTCGAAA7753.2907203E-49.3325041
CCCCATT7050.00144349849.2332221
CATAGAC6650.0092881838.700981
CTCAGAA7550.00269113648.621751
CTTGGAT7950.0042904398.1879511
CCCAGAT9550.00261094287.57349731
CTTCAAT16104.5632023E-67.18776661
CTTTTGT18456.380087E-77.0562831
AGTTTGT11350.00187402226.98280676
CTCAAAA12456.223837E-46.9712671
AAGTTTG10500.0068268586.86189175
CTTTGAT17501.570866E-56.61274531
CTCCATT12200.00384509286.5212781
CTCCAGC13300.0094302565.9819241
TCAATCT14500.0036200355.96448333
CTTTATT21254.2379215E-55.7861521
CAATGAT16550.00241502235.68126731
CTTTTAA15850.00932683055.47585341
Produced by FastQC (version 0.11.5)