FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005009492

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005009492
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1895374
Sequences flagged as poor quality0
Sequence length100-151
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGAAT5751.43284E-512.7057641
CCCAAAT13653.257337E-78.5635921
CTAAAAT16455.4241464E-67.10595941
CTCAATT12405.3054624E-47.07014231
CTCATGA10350.00519394837.0587581
CTTGGGA12908.3284965E-46.79610631
CTACGAT15301.1566927E-46.68505861
CTTTAAT27808.8384695E-96.3071781
CCACGGA14150.00236826236.19574361
CTTTGAT34258.913048E-116.1859451
CCTAAAA13250.0081832736.0652041
GTAAGTT14650.00349287485.9842851
CCTCGAT13450.0095533385.9750151
GTCTTGA13450.0095533385.9750151
CTTCGAT19808.247942E-55.9036881
CTCCAAC16100.00154395835.8991051
CTTCTAT23755.336191E-65.84465171
CTATTTA14850.00460710145.83733564
CCAAAAC17556.8048004E-45.82799961
CGAAGAT24157.077013E-65.74784561
Produced by FastQC (version 0.11.5)