FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005009496

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005009496
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences988672
Sequences flagged as poor quality0
Sequence length100-151
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGGAT4650.006633200710.9034571
TTAAACG4800.00868884110.5140863
ATAACAC6000.00411095339.6080178
CTCCGAC6600.0086300118.7794071
TTTATGG15108.4163283E-46.20385278
CTTCATT19005.1275023E-56.09937671
CAAAGGA16904.6793895E-46.00012731
CTGAAAT17205.8630883E-45.89547351
GGAAGAT18350.00133597235.5260031
CTTCAAT15850.0091807275.48366741
CTTCAAA18800.00181391225.3937311
CTTTTAT20257.925521E-45.36519241
CTTTCAA20050.00406009335.05746361
Produced by FastQC (version 0.11.5)