FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005009516

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005009516
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences533184
Sequences flagged as poor quality0
Sequence length100-151
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTATTTG4150.003099748412.07214458
CTCGAAA5551.6723035E-411.6640141
CCCGGTT4400.004624177711.4431051
CCTACTC1200.0043134039.55331520-24
TTGCCTT7653.2035797E-49.355639
CTTCAAT7050.00151561889.1823091
TCGAAAA7904.3874103E-49.0663682
GATTTTC11850.00313284626.64866975
CAAAAAA15400.00108736676.07185131
Produced by FastQC (version 0.11.5)