FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005009523

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005009523
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences610854
Sequences flagged as poor quality0
Sequence length100-151
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCCTAT3200.00852966113.251961
CTTCGGA5800.00364268949.7485681
CGATAAT6300.00719830078.9748721
CTTCCGA6550.009900158.6323191
CTCAAAA8250.0073525587.7102311
CTGCTCT8300.007760967.66378361
GTTCTTT13450.00193715356.3057651
Produced by FastQC (version 0.11.5)