FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005009526

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005009526
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1941801
Sequences flagged as poor quality0
Sequence length100-151
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCCCGA13252.0434803E-57.62512451
CTCATTT19802.8982504E-76.92505461
CCCGCAT14100.0026122926.1418181
CTCAAAT16553.7545006E-46.10470721
GTTTGAT23951.1855791E-66.0264181
CAACAAT28303.9373554E-65.35510061
GTAAAAG31154.155243E-65.09682131
CAAGATT20100.0044249095.0232774
Produced by FastQC (version 0.11.5)