FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005009534

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005009534
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1229965
Sequences flagged as poor quality0
Sequence length100-151
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTACACT4806.030385E-412.09631
CTCACAG6405.7651754E-410.2062531
CCCACAT9302.0125619E-59.3648781
CCCAAAA12559.938594E-89.2529471
CTAAAAT11051.6348533E-58.5385661
ATCCCGA13202.029492E-68.2474781
CTCAAAA17903.6442907E-77.29832651
CCCAAAG12305.2108086E-47.08076141
CTTTTGT21009.936775E-86.91217141
CTTTAAT15902.8163184E-56.84696251
CTCTCCG11800.00261498086.7657271
CACAAAT10850.0087359336.68919851
GTTCAAA15801.9134517E-46.4309441
CTTGAAT14150.00254807436.1550081
CAATGAT17701.2429128E-46.1506611
TTAATAT17751.3510752E-46.1133723
TTGATTC13150.0083730556.0513863
CTTCAAC14700.0039019355.92471841
CTTTGAT21053.4825363E-55.861391
CTTCTGT17356.387998E-45.85642241
Produced by FastQC (version 0.11.5)