FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005009541

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005009541
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1014024
Sequences flagged as poor quality0
Sequence length100-151
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CACACGT3252.3803135E-517.6861927
ACACGTC4308.349343E-716.710168
CACGTCT3951.2618014E-414.5526469
GAGCACA5852.7586607E-411.0538694
AGCACAC5953.2274015E-410.8680895
TGCAACA9552.9192815E-69.7806487
CTCCAAT7750.00346877058.3831581
GCACACG8000.00481801678.0831416
CTGATGC10350.0061003596.9420443
CTCGAAG10900.0096143966.6227811
AAGAGCA13500.00167185826.38983062
CCAAAAT12600.00549234786.3021541
CTTTGAT17859.820326E-45.6618281
Produced by FastQC (version 0.11.5)