FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005009542

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005009542
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2333839
Sequences flagged as poor quality0
Sequence length100-151
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTATTAG4400.004494115711.4896164
CTTCATT31250.07.95199731
CCCAAAT14554.5316658E-46.53021761
GTTTAAT15850.00127410335.99461651
CTTCAAT28308.3437044E-85.9400311
CATTTAA19558.1131264E-55.9106245
CTCAAAT19103.197241E-45.73991161
CTATAAT19153.3126338E-45.7249251
CCCACAT19504.233026E-45.622171
CTCATAA20801.6678391E-45.622171
CTCAAGA17450.0040010095.4449671
Produced by FastQC (version 0.11.5)