FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005009543

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005009543
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences877172
Sequences flagged as poor quality0
Sequence length100-151
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTACGGA4750.007753304710.6765871
TCTGTGT8256.310167E-48.7435553
GGAGATC10055.067828E-47.89529944
TCGGCCA9450.00241639777.6332624
CTTTCAC9850.00347488517.35515361
CTTCTGA10450.00617720056.9328481
CATGAAA12450.0046680956.40105151
CTTTTAT19758.950116E-55.86922651
CTTTATT19153.720703E-45.6747991
Produced by FastQC (version 0.11.5)