FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005009564

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005009564
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1301309
Sequences flagged as poor quality0
Sequence length100-151
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGAGAC4350.004132135311.6189563
CTCAAAT11201.9338187E-58.425441
CTCCGAT12154.520822E-47.1692251
CCCGTTT13401.798815E-47.04215861
CTTCGGT12300.00403459846.4916461
CTTTTAT25809.8103556E-86.18970871
CTTCAAT17657.936942E-45.757721
CTTCTGT19350.00253750135.2518741
CTTGCAG18300.00757069235.1565531
CTTTCAT23208.6343207E-45.0060971
Produced by FastQC (version 0.11.5)