FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005009631

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005009631
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1380189
Sequences flagged as poor quality0
Sequence length100-151
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCTCGAC8700.00102524138.3274271
CTCTTGT10550.0067796746.8671681
CCGACAT14253.909915E-46.6093481
CTCAAAA15651.7306802E-46.4810261
CTCCATA14700.00398112975.9141731
CTTAAAA18702.69931E-45.81138661
CTCCGGT15000.0049837695.79588941
CACAGAA18050.00108178955.6192831
TCAATTC15800.009085455.48926642
CTTTGAA18700.0016923245.42396071
CTCCTTC17700.00524129255.3210851
CTTTCAT24656.8227055E-55.29036571
Produced by FastQC (version 0.11.5)