FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005009642

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005009642
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1300409
Sequences flagged as poor quality0
Sequence length100-151
%GC47

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCCGATC6650.0092867048.7014652
CTCCAAG9000.00142765148.0531851
CTTCAAT19658.281396E-55.9015711
CCCGGCT16450.00219309735.72779751
CTTTCAT23302.7691362E-55.59921071
CTTCTGG16900.00302180655.5752821
CTTTTTT46007.2759576E-125.51468131
CTTCAAC17300.00398462175.4463741
TAAAATT26453.8222926E-55.1957942
Produced by FastQC (version 0.11.5)