FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005009679

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005009679
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1536756
Sequences flagged as poor quality0
Sequence length100-151
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTTAGAT4553.8386832E-412.7629541
CTATAAG9900.00358603277.33225251
CCAACGC11100.00136926937.19353441
TACGACG12350.0044202136.4353472
CTCGAAA16302.8600555E-46.23466441
CTAAATT14100.0024456946.1778131
TTACCGC14350.00315440526.038988
AAGATTC16950.0032680265.5387015
GAAGTAA15850.0094934875.4674685
CAAAGAG17600.004794095.361711
CAAGGAT19050.00208624135.33464671
TTTAGAA17950.00638063535.2326922
CTATAAT18500.0085958775.10086971
CTTTTAC21500.00171203955.06436971
Produced by FastQC (version 0.11.5)