FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005009685

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005009685
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences959505
Sequences flagged as poor quality0
Sequence length100-151
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGACGCA4150.002887495312.1886338
TCCGATC6655.3807144E-611.9554696
CCGATCT6756.36973E-611.7758957
GAATAGG4400.004465017511.4984936
CTTCCGA8801.18122596E-49.034534
AATCTAC6700.0099306158.6299995
CATAGAT8407.378056E-48.6074551
GCTCTTC9302.143425E-48.5519241
CTCCAAT8400.0070558377.746711
CAATTTA10100.00454173427.15606364
CCAATTT10800.0086936176.6922453
CTCTTCC11900.00298349146.68099742
CTTTTGT17952.2923552E-56.4448021
CTTTCAG15400.00102433266.10346841
CTTTCAT19206.124191E-56.02521851
GTTTTAA13350.0098349695.95751951
CAAAATT19605.234424E-45.53336431
TTCTTCG15800.0090764135.4893356
TCTTCCG15850.0093971765.47201873
Produced by FastQC (version 0.11.5)