FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005009726

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005009726
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2618565
Sequences flagged as poor quality0
Sequence length100-151
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTACGAC9850.00372338627.3044951
CTCAGCG11350.00190464836.97305771
CTCAGAC11350.00190464836.97305771
CCCACGG10900.0099387196.6008511
CCCAAAT20353.5062203E-66.36406371
GTCACAA13900.0023028996.21144871
CTCAAAT21206.825734E-66.10890051
CCCCGAA15550.0080190975.5523561
TTTAGGA20309.586407E-45.2904617
GTTTAAT23301.8493104E-45.2495181
CTTAAAT27851.781724E-55.1669141
TAACCGT19550.0034311755.1271929
CCCATTT30001.2013021E-55.0364491
Produced by FastQC (version 0.11.5)