FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005009758

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005009758
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences801141
Sequences flagged as poor quality0
Sequence length100-151
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGAAT4251.1737799E-515.4787221
CGAGAAT5801.0225012E-613.8626471
CTCACAT3350.00924765813.0914561
CATTCGT4900.00914059110.4419951
ATGGGCT5900.0036976189.7316328
CCTCAAT6350.00583055249.2086881
CAAGAAG12055.5542514E-57.7429063
ATTCCTC9500.0026733327.55481968
ATGATGT13250.009816425.95832973
CAAAAGA16600.0022059135.72422551
AAAGATA21706.544104E-55.62259634
AAGATAA15350.00712859445.61074545
CTTTTAT15750.0077392595.56906371
AAAAGAT19600.00342662735.1264853
Produced by FastQC (version 0.11.5)