FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005009770

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005009770
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1160420
Sequences flagged as poor quality0
Sequence length100-151
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTTCTAA4700.00716411310.7913191
GTTTCAC7903.9177103E-49.1716451
TCCGATC9502.803511E-59.1054088
ACGCTCT10851.2502591E-48.0135661
CGCTCTT11804.012698E-57.948362
CTTTAAC9450.00231451457.6673011
GATTGTA9600.00284054047.5087995
TTCCGAT17502.7996066E-77.41440347
AGATTGT10800.00110132647.34225374
CTCTTCC17903.146104E-66.8463074
CTTCCGA12708.114073E-46.8111326
GCTCTTC14856.850913E-46.3106973
CCGATCT12650.00581149526.2682159
TTCCGTA14250.00297555056.07027159
TTATTTA13150.0086821286.030144
CCGATTT14350.00321593116.02822973
AATATTA16754.4401814E-46.02497155
ATCGTCA15800.0093455245.4750064
GGCAGAT19400.0026805875.2287831
Produced by FastQC (version 0.11.5)