FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005009775

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005009775
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1882361
Sequences flagged as poor quality0
Sequence length100-151
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCACTC5700.002684022810.1168451
CTAATGC8150.00553524037.96003341
CTCTAAA9850.00365561887.31802271
CTCAGAA12901.2283506E-47.264131
CTTTAGA10550.0071231396.83246661
CTCCAAC14254.161428E-46.5759491
CTTCCGA15902.2718032E-46.34688851
CTATTCC15007.7508163E-46.2471521
TCAGATT24309.94523E-65.63293552
CTTTGGT19655.656187E-45.50248241
Produced by FastQC (version 0.11.5)