FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005009786

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005009786
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences782780
Sequences flagged as poor quality0
Sequence length100-151
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCCTTCG3700.001114347613.8323911
GTTCTGC9058.871211E-911.9696715
TGTTCTG8306.2896215E-59.570934
CTTCAAT13201.9141225E-89.4162041
CTCCATT10004.332063E-58.7736861
CTCCAAT8406.5989664E-48.7040541
CTCATTT7850.0034693378.38250351
TTGCATC9250.00193835827.8062479
CTTTGTA11752.8279802E-47.46696761
AAATCCT13351.8266706E-47.0323684
ATCAAAG14656.466266E-56.9870091
CTCAAAA10750.0074333386.80130771
CTTCTTT30409.10768E-96.01266861
CTTTCAT15850.00126516665.99673651
Produced by FastQC (version 0.11.5)