FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005009828

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005009828
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3751519
Sequences flagged as poor quality0
Sequence length100-151
%GC44

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCCCGAG7552.001924E-510.6233841
CCCAGGA16609.560972E-87.90645071
CCCAATT19852.5345798E-76.97927431
CTCAAAA49500.06.77594381
CTTAGAT12100.0032463146.62864071
CTCAAAT33155.456968E-126.59864661
CCCGACT14404.114093E-46.58260871
CTCCGAG14906.226942E-46.36171531
CCCTTGT24101.646331E-76.3535941
CCTGGTT17459.613075E-56.26776931
CTCCACT23356.2672916E-76.24540041
CCCCGAT18753.8500082E-56.22208451
CCTAAAT18351.9156908E-45.9603581
CCCAAAC20902.9166906E-55.9308891
CCCTTAT27954.296362E-75.73928831
CTCCAAT37207.6397555E-105.68423751
CTCCAAG27151.5227397E-65.6398381
CTCATGT19554.5278005E-45.5945051
CTAAGAT15900.0088496645.50302271
CTCAAAG35801.0624717E-85.49917941
Produced by FastQC (version 0.11.5)