FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005009843

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005009843
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences579558
Sequences flagged as poor quality0
Sequence length100-151
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTTGGA2650.002401186416.038411
GTTTCCC4500.006406278310.9533876
CTCGAAA5200.00144311610.8978951
CTCAAAA6400.0080397828.854541
GTCTTCT7400.00270592848.6152281
CATAAAG8200.0068231087.77471731
CCTTGAT10650.00114083317.31642681
CTTGAAG11050.00168641977.05157851
CAAAAAA13753.3168122E-46.69725131
Produced by FastQC (version 0.11.5)