FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005009846

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005009846
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences549567
Sequences flagged as poor quality0
Sequence length100-151
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCCGTAT3950.001980318712.8151071
TTTATGG5800.00307288869.9507257
GAAGTTC6800.00106072769.54830555
AATATTA13050.00109183996.63381625
Produced by FastQC (version 0.11.5)