FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005009895

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005009895
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1150442
Sequences flagged as poor quality0
Sequence length100-151
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CACACGT3003.3758272E-416.191747
CCCCGAG3100.007768962513.4420371
CCTAAAG4300.005065539411.3058991
CACGTCT4400.006048579711.0398229
GCACACG7051.9238189E-49.8447146
CTAAAAT11656.3491825E-78.9421271
GTCCGGC13200.00191421436.31368351
GCCAAAG14357.1053323E-46.2916851
CCATCAT18700.0028756695.1995041
AGCTCGA4850.00409010565.055601135-139
Produced by FastQC (version 0.11.5)