FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005009904

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005009904
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1226030
Sequences flagged as poor quality0
Sequence length100-151
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTTCGAG9251.9241626E-59.4005281
AGGTTGG8004.5626328E-49.033056
CGAAGAT15152.2506356E-88.6093941
CCCGAGT1900.0025054027.606778615-19
TACAGTT9800.00337699227.3772282
CTCAAAG12054.1942974E-47.2161721
CAAAGGT12200.0037719736.53349451
CCCGCAG12350.0042859216.45414071
CTTCAGC19859.615436E-55.8407981
CTTTTCT27403.2820026E-75.81814861
CTTCTGG16250.00190038465.79699131
CGAAAAA20301.3281609E-45.7113221
CTTTTAA19000.00206212755.33933451
TCAATGC17700.0053808175.30906963
CTTCCAG21700.0019791795.00892161
Produced by FastQC (version 0.11.5)