FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005009943

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005009943
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1762737
Sequences flagged as poor quality0
Sequence length100-151
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCCCATT10751.1514807E-48.0711261
CTAAAAT15653.0079755E-67.39208651
AATTCTA12004.3419312E-47.1949035
AGATCTT12859.472215E-46.7195474
CTCGCGC14806.348874E-46.3510131
GTTTGAG13300.0094703765.98001671
CTCAGCC13350.009844255.95761971
GTTTGTT17306.4674765E-45.85117771
CTTCAAC23605.712671E-65.82107161
GATCTTG18702.9673913E-45.7713125
ATTCTAT18853.3071573E-45.7253876
TTACCGC17700.0056876275.2843928
CTTCGAT20050.00415561265.04864741
GTCACCG20200.00455875045.01115751
Produced by FastQC (version 0.11.5)