FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005009961

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005009961
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1521351
Sequences flagged as poor quality0
Sequence length100-151
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCCGTGG6600.00871045058.7700191
CCCAGAG7550.00268398928.624821
CACTTGA10709.5984177E-47.4381241
CTTGAAT13852.8077952E-46.7912241
TTGTGCC12600.00552867776.2986499
GATTTAA13050.0079574886.08145435
CTTTCAC15750.00133231035.9719651
ATCCGCT19557.892461E-55.92144541
CTTCTGA19708.8149594E-55.8763581
CCCCGCC15350.0065308095.65623431
CTGCGAT15750.008673135.51258331
CTTCAGA15900.0096256915.4605781
CTTCTCT19300.00255978065.24837971
CTTTGCG18600.0095070635.05690571
Produced by FastQC (version 0.11.5)