FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005009963

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005009963
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences895998
Sequences flagged as poor quality0
Sequence length100-151
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTTGAAT7903.7932234E-510.0228091
CTCCAAT7402.1696706E-49.7272961
CGAGAAC7753.45109E-49.2879991
CCCAAAT6350.0066149399.0685981
GTCAATT6350.0066149399.0685981
CACCGTT8508.671827E-48.468471
CAAACAA12150.0038708856.5168881
CTGCAAG12900.00722217056.13799951
CTTTTGC19300.00272536955.22149131
Produced by FastQC (version 0.11.5)