FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005009975

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005009975
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences684493
Sequences flagged as poor quality0
Sequence length100-151
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTCTAG1200.005106664730.045826145
CCCACAT4700.007328803710.75731851
CTTTCAT13502.0901789E-46.95526171
CTTCAAA12758.280945E-46.79790261
GAATAAT10700.0083381456.72066645
CTTCAAT11950.00313645746.6485761
TTTTGAT14505.228922E-46.45191862
CTTTATT15150.0057450165.72100731
GTCGACA3050.0064300875.664705830-34
Produced by FastQC (version 0.11.5)