FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005010008

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005010008
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1436368
Sequences flagged as poor quality0
Sequence length100-151
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTACGGG4700.007559838710.7137551
GTAAGAT7552.6747145E-49.52784251
CCTACGC6550.0085812568.785981
CTTATTC11200.00165697227.0650651
TCCGATC10450.00677962936.86721668
CCCGGCT16403.477568E-46.14081051
CTTCCGA13200.0094645445.9802016
GTCATTT14550.00384437975.93280121
TTCCGAT18502.6546637E-45.8185747
CTTTGAC18602.7646148E-45.80122661
ATGTTGT15050.005747025.72191956
CGAAGCC19354.7221972E-45.5763731
GTTTTAA17050.00366810875.48479651
CTTCAAG17450.00482128235.35907031
ATCAAAT21150.0015526095.1017881
CTTCGTC18500.0095497615.0549071
Produced by FastQC (version 0.11.5)