FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005010079

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005010079
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences41190154
Sequences flagged as poor quality0
Sequence length20-151
%GC64

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTGCAATTCACATTAATTCTCGCAGCTAGCTGCGTTCTTCATCGACGCA1734200.4210229464060756No Hit
GTCCTGCAATTCACATTAATTCTCGCAGCTAGCTGCGTTCTTCATCGACG1430440.34727716725701No Hit
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG1355210.3290130937602224No Hit
TGGGGTGGGGGTGGGGGGGGGCGCGCCGGCGCCCGCCGGGCTCCCCGGGG1234260.29964928026246274No Hit
GTGTCCTGCAATTCACATTAATTCTCGCAGCTAGCTGCGTTCTTCATCGA1183040.2872142697014437No Hit
GGGGTGGGGGTGGGGGGGGGCGCGCCGGCGCCCGCCGGGCTCCCCGGGGG1162650.2822640575706514No Hit
GTGGGGTGGGGGTGGGGGGGGGCGCGCCGGCGCCCGCCGGGCTCCCCGGG1121130.2721839787246243No Hit
GTCCTGTATTGTTATTTTTCGTCACTACCTCCCCGGGTCGGGAGTGGGTA1006950.2444637618980497No Hit
GCAATTCACATTAATTCTCGCAGCTAGCTGCGTTCTTCATCGACGCACGA827920.20099949128619424No Hit
CGCCTTAGGACACCTGCGTTACCGTTTGACAGGTGTACCGCCCCAGTCAA621080.15078360716981054No Hit
TGCAATTCACATTAATTCTCGCAGCTAGCTGCGTTCTTCATCGACGCACG618630.15018880482942598No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG592220.143777078376546No Hit
CGTTTGAATATTTGCTACTACCACCAAGATCTGCACCTGCGGCGGCTCCA575980.13983438857742556No Hit
GGGGGTGGGGGGGGGCGCGCCGGCGCCCGCCGGGCTCCCCGGGGGCGGCC553960.1344884508079285No Hit
GGGGTGGGGGTGGGGGGGGCGCGCCGGCGCCCGCCGGGCTCCCCGGGGGC536840.13033211771920059No Hit
TCCTGCAATTCACATTAATTCTCGCAGCTAGCTGCGTTCTTCATCGACGC512160.12434039455157173No Hit
GTGGGGGTGGGGGGGGGCGCGCCGGCGCCCGCCGGGCTCCCCGGGGGCGG487770.11841907655892715No Hit
TGTCCTGCAATTCACATTAATTCTCGCAGCTAGCTGCGTTCTTCATCGAC477250.11586506814225556No Hit
GCCCCAGTCAAACTCCCCACCTGGCACTGTCCCCGGAGCGGGTCGCGCCC475200.11536737638805623No Hit
TTGACATTCAGAGCACTGGGCAGAAATCACATCGCGTCAACACCCGCCGC434690.10553250177214682No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)