FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005010142

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005010142
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences708102
Sequences flagged as poor quality0
Sequence length100-151
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTACGAA3000.005171010314.2929561
CCTCGAA4806.860375E-411.9107981
CTTCAGT4450.005281848411.2416521
CCCAAAA6003.661872E-410.7197171
CCAACGA4800.00927003910.42194751
CCTCAAG6550.0090452388.7285231
CATTGAC7850.0042613398.1934151
Produced by FastQC (version 0.11.5)