FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005010190

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005010190
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1461919
Sequences flagged as poor quality0
Sequence length100-151
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTAAGAT3650.001076755913.896741
CCTAAAT4503.548989E-412.8820571
CTCGAGA4550.00562657511.1479341
CTAAATC4550.00582685711.0956882
CTCAGAT8356.807686E-48.6780341
CTACTAT7550.00264752288.6378041
CTCTCTT10357.212607E-58.4013411
CCCCTCC11904.225152E-57.91597031
CTACGAT9450.00231364977.66789151
CCCAGAA15251.9731415E-67.60252571
CTTTGGT10900.0092764876.6478511
CCCCTTT13600.00166199816.3936681
CTCCGCT15057.569521E-46.2591391
CTTTGAA22502.4442998E-66.11897751
CCTTGAT22903.3004344E-66.01209551
CCCACGG14800.00428512045.87526271
CTTGCAG23402.9777846E-55.5739671
CACCGAG17100.00348390995.50877481
CTCCCTG18600.00157830685.45409731
GTTTCAA15950.0097993995.45165441
Produced by FastQC (version 0.11.5)