FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005010191

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005010191
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1243535
Sequences flagged as poor quality0
Sequence length100-151
%GC43

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCACAT5650.002417841510.2444631
CTCACAA6506.8425055E-410.0179021
CCCCATT9051.5127676E-59.5935711
CCCGTAT8457.7779725E-48.562311
ATCCAAG8650.00107614988.2866476
CTCCGAT10508.681191E-58.2687451
CCCTCTT9050.00153409267.99464231
CCCAAAG12154.6928012E-47.14582871
CTTTAAT20951.0072108E-76.9070661
CGATAAT13802.6854052E-46.81572251
CTCCAAA15451.489376E-46.5561241
CTTATTT23701.3834142E-76.41089441
CTTTTCT32301.72804E-106.27195741
CAATCCA14000.00259532246.14494474
CTCATTT15359.777677E-46.12749051
CTATAAA17105.521724E-45.9235161
CAAGAAG17758.890265E-45.70659881
Produced by FastQC (version 0.11.5)