FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005010196

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005010196
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences621223
Sequences flagged as poor quality0
Sequence length100-151
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGGGGGG650.00712307413.620604115-119
CATTAAG3300.00895161113.1554691
CCCAAAG3850.001626229613.1554691
CCCCGGT3350.00988576212.9591191
CCCCGAA4650.006679639710.8921621
CACAGAA5850.0032208349.89471151
CTTGATA8550.0082043897.6163241
AAAAGAT16250.00226481335.71104763
Produced by FastQC (version 0.11.5)