FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005010237

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005010237
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1439684
Sequences flagged as poor quality0
Sequence length100-151
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCCGAT11051.48770305E-58.6030291
CCCTTAT8750.0091904177.52150541
GTTCAAT12807.5388886E-46.8555391
CTTTGAT24251.746339E-76.33253861
CTCAAGA12800.0056613296.2842441
TCAATGT15158.5128186E-46.1985283
CTTCAAT20502.0697642E-56.06408641
TCAAGAC14850.00460521045.83730842
CCCTTTT18852.6517882E-45.8190251
TTCGATT14950.0049615995.79826352
GTTTCTT27101.3905155E-65.6665711
GATACAT15300.0064115345.66562377
CTTGAAT15550.00669937445.6431441
CATCAAT24405.011566E-55.3945221
CTTTTAT31704.4994704E-65.07497261
Produced by FastQC (version 0.11.5)