FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005010248

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005010248
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences400296
Sequences flagged as poor quality0
Sequence length100-151
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGGGATT2850.003235983215.3347981
CCTGGAT3050.005079560414.3292381
AAGATAG6050.0043439049.54153255
CTTCTAT6950.00118436059.4325551
TACATTT6600.0088811028.7464053
AAAGATA11954.6614972E-57.8498074
CTTCTTT13351.6364585E-47.0930621
AGGGCAG3200.00165987265.863557370-74
Produced by FastQC (version 0.11.5)