FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005010249

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005010249
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1339419
Sequences flagged as poor quality0
Sequence length100-151
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCACAAT13652.6791714E-46.8171331
CTTTTGT21951.973207E-66.19598251
CTTCCGG26703.885907E-86.1660591
GATCTTG12800.00746724946.118795
GTTTGAT17458.2043913E-45.74279981
CCACCAT16400.00245370375.67401651
CTCAAAA16500.00263745175.63962841
CAACAAA21202.9448527E-45.40225651
ATTAAAT18650.00190454765.373291
Produced by FastQC (version 0.11.5)