FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005010287

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005010287
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1095477
Sequences flagged as poor quality0
Sequence length100-151
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCAGAA5250.001307012211.0296241
CCCTCAT9151.776642E-48.701651
CTCGCGC8609.222183E-48.41651
TGTCATG8450.0075408077.68958232
CTTATAT10950.00122094417.2712421
CCTCGAT13351.7783727E-47.04842571
GAACATA10400.00618610956.93216234
CTGTTAT11600.0022468626.86380151
CTCGATT10550.00683770476.86084461
CTAAAAT13000.0073909016.12462331
CTTCCTT15850.0092506445.4800181
ATACGTA3200.00997307155.44361115-119
CTTCTCC18900.00195619355.3616231
CTTTCTT24405.8856367E-55.3396491
CTTTTCT22254.9868325E-45.20499131
CTTTCAT19600.00308612645.1701361
Produced by FastQC (version 0.11.5)