FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005010459

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005010459
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences807011
Sequences flagged as poor quality0
Sequence length100-151
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CAATTGG3200.00686761413.6942271
CCTCAGT3300.00841755413.2792511
CACGTTT5100.001037881111.3373493
CTTAAAT5800.002777369710.0739141
CACAGAT9702.8873637E-69.7883141
TACAAGC7450.00240032428.7307417
CTGTAAA10951.2663667E-48.0039321
CTTCAAT11400.00169927387.04732131
CTCAAAA10450.00571051246.9890791
CTTTCAT14000.00210405336.26021771
CAAAAGA15600.00105886526.08632331
TTTTCCC14350.00312253536.04357867
CTTTCTC13300.0085206266.04056171
CTTTCTT19450.0025019155.2570811
Produced by FastQC (version 0.11.5)