FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005010488

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005010488
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1234669
Sequences flagged as poor quality0
Sequence length100-151
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTATGTT10601.0132091E-48.1598131
CGAACTC9400.0023935757.6411974
CTTGAAT11450.002048056.92455771
GTCATAA10700.0081641546.73629471
CCCAAAA10700.0081641546.73629471
GTTTGAT13000.00105904816.65338661
GTATGAT12700.00606081036.24300671
CGGGAAT14250.00297878666.0697561
ACAAATC14450.00361886715.9648943
TCATATC16700.0029201555.59134344
GTCCGGC18250.0079607875.13434841
Produced by FastQC (version 0.11.5)