FastQCFastQC Report
Sat 4 Jun 2022
EGAF00005010543

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005010543
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences44443225
Sequences flagged as poor quality0
Sequence length30-100
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGTCGGAGGCCAAGCGGTCTTAGGAAGACAAGTGAGTGATGCAACTCCTT24037285.408536396717385No Hit
AAGTCGGAGGCCAAGCGGTCTTAGGAAGACAAGTGAGTGATGCAACTCCT11983882.696446983764117No Hit
AGTCGGAGGGCCAAGCGGTCTTAGGAAGACAAGTGAGTGATGCAACTCCT3591560.8081231728795558No Hit
CGGAGGCCAAGCGGTCTTAGGAAGACAAGTG2996200.6741634973609588No Hit
AAGTCGGAGGGCCAAGCGGTCTTAGGAAGACAAGTGAGTGATGCAACTCC759950.1709934416325548No Hit
AGTCGGAGGCCCAAGCGGTCTTAGGAAGACAAGTGAGTGATGCAACTCCT619120.1393058222034967No Hit
AGTCGGAAGGCCAAGCGGTCTTAGGAAGACAAGTGAGTGATGCAACTCCT461460.10383134887263469No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)